My favorite comic stories that star women? That’s easy. Of course I love Bryan Q. Miller’s run on Batgirl , but long before Stephanie Brown took up the pointy-eared mantle, there was Sailor Moon. 
At the time I didn’t realize just how good I had it with Sailor Moon. By the third arc, the cast featured no less than ten female leads - each with her own personality, her own strengths and flaws. And that’s not even counting the often excellent supporting female characters and female villains.